Articles

Young, E., Pastor, S., Rajagopalan, R., McCaffrey, J., Sibert, J., Mak ACY, Kwok, P. Y., Riethman, H. C., and Xiao, M. (2017). High-throughput single-molecule mapping links subtelomeric variants and long-range haplotypes with specific telomeres.. Nucleic acids research, 45 (9), pp. e73.

Lynch, S. M., Mitra, N., Ross, M., Newcomb, C., Dailey, K., Jackson, T., Zeigler-Johnson, C. M., Riethman, H. C., Branas, C. C., and Rebbeck, T. R. (2017). A Neighborhood-Wide Association Study (NWAS): Example of prostate cancer aggressiveness. PLOS ONE, 12 (3), pp. 1-13.

Nelson, D. M., Jaber-Hijazi, F., Cole, J. J., Robertson, N. A., Pawlikowski, J. S., Norris, K. T., Criscione, S. W., Pchelintsev, N. A., Piscitello, D., Stong, N., Rai, T. S., McBryan, T., Otte, G. L., Nixon, C., Clark, W., Riethman, H. C., Wu, H., Schotta, G., Garcia, B. A., Neretti, N., Baird, D. M., Berger, S. L., and Adams, P. D. (2016). Mapping H4K20me3 onto the chromatin landscape of senescent cells indicates a function in control of cell senescence and tumor suppression through preservation of genetic and epigenetic stability.. Genome biology, 17 (1), pp. 158.

McCaffrey, J., Sibert, J., Zhang, B., Zhang, Y., Hu, W., Riethman, H. C., and Xiao, M. (2016). CRISPR-CAS9 D10A nickase target-specific fluorescent labeling of double strand DNA for whole genome mapping and structural variation analysis.. Nucleic acids research, 44 (2), pp. e11.

Tutton, S., Azzam, G. A., Stong, N., Vladimirova, O., Wiedmer, A., Monteith, J. A., Beishline, K., Wang, Z., Deng, Z., Riethman, H. C., McMahon, S. B., Murphy, M., and Lieberman, P. M. (2016). Subtelomeric p53 binding prevents accumulation of DNA damage at human telomeres.. The EMBO journal, 35 (2), pp. 193-207.

Lynch, S. M., Peek, M. K., Mitra, N., Ravichandran, K., Branas, C., Spangler, E., Zhou, W., Paskett, E. D., Gehlert, S., DeGraffinreid, C., Rebbeck, T. R., and Riethman, H. C. (2016). Race, Ethnicity, Psychosocial Factors, and Telomere Length in a Multicenter Setting.. PloS one, 11 (1), pp. e0146723.

Sedic, M., Skibinski, A., Brown, N., Gallardo, M., Mulligan, P., Martinez, P., Keller, P. J., Glover, E., Richardson, A. L., Cowan, J., Toland, A. E., Ravichandran, K., Riethman, H. C., Naber, S. P., Näär, A. M., Blasco, M. A., Hinds, P. W., and Kuperwasser, C. (2015). Haploinsufficiency for BRCA1 leads to cell-type-specific genomic instability and premature senescence.. Nature communications, 6, pp. 7505.

Porro, A., Feuerhahn, S., Delafontaine, J., Riethman, H. C., Rougemont, J., and Lingner, J. (2014). Functional characterization of the TERRA transcriptome at damaged telomeres.. Nature communications, 5, pp. 5379.

Stong, N., Deng, Z., Gupta, R., Hu, S., Paul, S., Weiner, A. K., Eichler, E. E., Graves, T., Fronick, C. C., Courtney, L., Wilson, R. K., Lieberman, P. M., Davuluri, R. V., and Riethman, H. C. (2014). Subtelomeric CTCF and cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline.. Genome research, 24 (6), pp. 1039-50.

Deng, Z., Wang, Z., Stong, N., Plasschaert, R., Moczan, A., Chen, H. S., Hu, S., Wikramasinghe, P., Davuluri, R. V., Bartolomei, M. S., Riethman, H. C., and Lieberman, P. M. (2012). A role for CTCF and cohesin in subtelomere chromatin organization, TERRA transcription, and telomere end protection.. The EMBO journal, 31 (21), pp. 4165-78.

Conlin, L. K., Kramer, W., Hutchinson, A. L., Li, X., Riethman, H. C., Hakonarson, H., Mulley, J. C., Scheffer, I. E., Berkovic, S. F., Hosain, S. A., and Spinner, N. B. (2011). Molecular analysis of ring chromosome 20 syndrome reveals two distinct groups of patients.. Journal of medical genetics, 48 (1), pp. 1-9.

Descipio, C., Morrissette, J. D., Conlin, L. K., Clark, D., Kaur, M., Coplan, J., Riethman, H. C., Spinner, N. B., and Krantz, I. D. (2010). Two siblings with alternate unbalanced recombinants derived from a large cryptic maternal pericentric inversion of chromosome 20.. American journal of medical genetics. Part A, 152A (2), pp. 373-82.

Butts, S., Riethman, H. C., Ratcliffe, S., Shaunik, A., Coutifaris, C., and Barnhart, K. (2009). Correlation of telomere length and telomerase activity with occult ovarian insufficiency.. The Journal of clinical endocrinology and metabolism, 94 (12), pp. 4835-43.

Deng, Z., Norseen, J., Wiedmer, A., Riethman, H. C., and Lieberman, P. M. (2009). TERRA RNA binding to TRF2 facilitates heterochromatin formation and ORC recruitment at telomeres.. Molecular cell, 35 (4), pp. 403-13.

Lou, Z., Wei, J., Riethman, H. C., Baur, J. A., Voglauer, R., Shay, J. W., and Wright, W. E. (2009). Telomere length regulates ISG15 expression in human cells.. Aging, 1 (7), pp. 608-21.

Tsipouri, V., Schueler, M. G., Hu, S., Dutra, A., Pak, E., Riethman, H. C., and Green, E. D. (2008). Comparative sequence analyses reveal sites of ancestral chromosomal fusions in the Indian muntjac genome.. Genome biology, 9 (10), pp. R155.

DeScipio, C., Spinner, N. B., Kaur, M., Yaeger, D., Conlin, L. K., Ambrosini, A., Hu, S., Shan, S., Krantz, I. D., and Riethman, H. C. (2008). Fine-mapping subtelomeric deletions and duplications by comparative genomic hybridization in 42 individuals.. American journal of medical genetics. Part A, 146A (6), pp. 730-9.

Riethman, H. C. (2008). Human subtelomeric copy number variations.. Cytogenetic and genome research, 123 (1-4), pp. 244-52.

Riethman, H. C. (2008). Human telomere structure and biology.. Annual review of genomics and human genetics, 9, pp. 1-19.

Ambrosini, A., Paul, S., Hu, S., and Riethman, H. C. (2007). Human subtelomeric duplicon structure and organization.. Genome biology, 8 (7), pp. R151.

Riethman, H. C., Ambrosini, A., and Paul, S. (2005). Human subtelomere structure and variation.. Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 13 (5), pp. 505-15.

Gibbs, R. A., Weinstock, G. M., Metzker, M. L., Muzny, D. M., Sodergren, E. J., Scherer, S., Scott, G., Steffen, D., Worley, K. C., Burch, P. E., Okwuonu, G., Hines, S., Lewis, L., DeRamo, C., Delgado, O., Dugan-Rocha, S., Miner, G., Morgan, M., Hawes, A., Gill, R., Celera, Holt, R. A., Adams, M. D., Amanatides, P. G., Baden-Tillson, H., Barnstead, M., Chin, S., Evans, C. A., Ferriera, S., Fosler, C., Glodek, A., Gu, Z., Jennings, D., Kraft, C. L., Nguyen, T., Pfannkoch, C. M., Sitter, C., Sutton, G. G., Venter, J. C., Woodage, T., Smith, D., Lee, H. M., Gustafson, E., Cahill, P., Kana, A., Doucette-Stamm, L., Weinstock, K., Fechtel, K., Weiss, R. B., Dunn, D. M., Green, E. D., Blakesley, R. W., Bouffard, G. G., De Jong, P. J., Osoegawa, K., Zhu, B., Marra, M., Schein, J., Bosdet, I., Fjell, C., Jones, S., Krzywinski, M., Mathewson, C., Siddiqui, A., Wye, N., McPherson, J., Zhao, S., Fraser, C. M., Shetty, J., Shatsman, S., Geer, K., Chen, Y., Abramzon, S., Nierman, W. C., Havlak, P. H., Chen, R., Durbin, K. J., Egan, A., Ren, Y., Song, X. Z., Li, B., Liu, Y., Qin, X., Cawley, S., Worley, K. C., Cooney, A. J., D'Souza, L. M., Martin, K., Wu, J. Q., Gonzalez-Garay, M. L., Jackson, A. R., Kalafus, K. J., McLeod, M. P., Milosavljevic, A., Virk, D., Volkov, A., Wheeler, D. A., Zhang, Z., Bailey, J. A., Eichler, E. E., Tuzun, E., Birney, E., Mongin, E., Ureta-Vidal, A., Woodwark, C., Zdobnov, E., Bork, P., Suyama, M., Torrents, D., Alexandersson, M., Trask, B. J., Young, J. M., Huang, H., Wang, H., Xing, H., Daniels, S., Gietzen, D., Schmidt, J., Stevens, K., Vitt, U., Wingrove, J., Camara, F., Mar Albà, M., Abril, J. F., Guigo, R., Smit, A., Dubchak, I., Rubin, E. M., Couronne, O., Poliakov, A., Hübner, N., Ganten, D., Goesele, C., Hummel, O., Kreitler, T., Lee, Y. A., Monti, J., Schulz, H., Zimdahl, H., Himmelbauer, H., Lehrach, H., Jacob, H. J., Bromberg, S., Gullings-Handley, J., Jensen-Seaman, M. I., Kwitek, A. E., Lazar, J., Pasko, D., Tonellato, P. J., Twigger, S., Ponting, C. P., Duarte, J. M., Rice, S., Goodstadt, L., Beatson, S. A., Emes, R. D., Winter, E. E., Webber, C., Brandt, P., Nyakatura, G., Adetobi, M., Chiaromonte, F., Elnitski, L., Eswara, P., Hardison, R. C., Hou, M., Kolbe, D., Makova, K., Miller, W., Nekrutenko, A., Riemer, C., Schwartz, S., Taylor, J., Yang, S., Zhang, Y., Lindpaintner, K., Andrews, T. D., Caccamo, M., Clamp, M., Clarke, L., Curwen, V., Durbin, R., Eyras, E., Searle, S. M., Cooper, G. M., Batzoglou, S., Brudno, M., Sidow, A., Stone, E. A., Venter, J. C., Payseur, B. A., Bourque, G., López-Otín, C., Puente, X. S., Chakrabarti, K., Chatterji, S., Dewey, C., Pachter, L., Bray, N., Yap, V. B., Caspi, A., Tesler, G., Pevzner, P. A., Haussler, D., Roskin, K. M., Baertsch, R., Clawson, H., Furey, T. S., Hinrichs, A. S., Karolchik, D., Kent, W. J., Rosenbloom, K. R., Trumbower, H., Weirauch, M., Cooper, D. N., Stenson, P. D., Ma, B., Brent, M., Arumugam, M., Shteynberg, D., Copley, R. R., Taylor, M. S., Riethman, H. C., Mudunuri, U., Peterson, J., Guyer, M., Felsenfeld, A., Old, S., Mockrin, S., and Collins, F. (2004). Genome sequence of the Brown Norway rat yields insights into mammalian evolution.. Nature, 428 (6982), pp. 493-521.

Riethman, H. C., Ambrosini, A., Castaneda, C., Finklestein, J., Hu, X. L., Mudunuri, U., Paul, S., and Wei, J. (2004). Mapping and initial analysis of human subtelomeric sequence assemblies.. Genome research, 14 (1), pp. 18-28.

Ning, Y., Xu, J. F., Li, Y., Chavez, L., Riethman, H. C., Lansdorp, P. M., and Weng, N. P. (2003). Telomere length and the expression of natural telomeric genes in human fibroblasts.. Human molecular genetics, 12 (11), pp. 1329-36.

Riethman, H. C., Ambrosini, A., Castaneda, C., Finklestein, J. M., Hu, X. L., Paul, S., and Wei, J. (2003). Human subtelomeric DNA.. Cold Spring Harbor symposia on quantitative biology, 68, pp. 39-47.

Xiang, Z., Morse, E., Hu, X. L., Flint, J., Chi, H. C., Grady, D. L., Moyzis, R. K., and Riethman, H. C. (2001). A sequence-ready map of the human chromosome 1q telomere.. Genomics, 72 (1), pp. 105-7.

Riethman, H. C., Xiang, Z., Paul, S., Morse, E., Hu, X. L., Flint, J., Chi, H. C., Grady, D. L., and Moyzis, R. K. (2001). Integration of telomere sequences with the draft human genome sequence.. Nature, 409 (6822), pp. 948-51.

Knight, S. J., Lese, C. M., Precht, K. S., Kuc, J., Ning, Y., Lucas, S., Regan, R., Brenan, M., Nicod, A., Lawrie, N. M., Cardy, D. L., Nguyen, H., Hudson, T. J., Riethman, H. C., Ledbetter, D. H., and Flint, J. (2000). An optimized set of human telomere clones for studying telomere integrity and architecture.. American journal of human genetics, 67 (2), pp. 320-32.

Lese, C. M., Fantes, J. A., Riethman, H. C., and Ledbetter, D. H. (1999). Characterization of physical gap sizes at human telomeres.. Genome research, 9 (9), pp. 888-94.

Xiang, Z., Hu, X. L., Flint, J., and Riethman, H. C. (1999). A sequence-ready map of the human chromosome 17p telomere.. Genomics, 58 (2), pp. 207-10.

Riethman, H. C. (1997). Closing in on telomeric closure.. Genome research, 7 (9), pp. 853-5.

Russell, M. W., Munroe, D. J., Bric, E., Housman, D. E., Dietz-Band, J., Riethman, H. C., Collins, F. S., and Brody, L. C. (1996). A 500-kb physical map and contig from the Harvey ras-1 gene to the 11p telomere.. Genomics, 35 (2), pp. 353-60.

Negorev, D., Riethman, H. C., Wechsler-Reya, R., Sakamuro, D., Prendergast, G. C., and Simon, D. (1996). The Bin1 Gene Localizes to Human Chromosome 2q14 by PCR Analysis of Somatic Cell Hybrids and Fluorescence in Situ Hybridization. Genomics, 33 (2), pp. 329-31.

Negorev, D., Riethman, H. C., Wechsler-Reya, R., Sakamuro, D., Prendergast, G. C., and Simon, D. (1996). The Bin1 gene localizes to human chromosome 2q14 by PCR analysis of somatic cell hybrids and fluorescence in situ hybridization.. Genomics, 33 (2), pp. 329-31.

Macina, R. A., Morii, K., Hu, X. L., Negorev, D. G., Spais, C., Ruthig, L. A., and Riethman, H. C. (1995). Molecular cloning and RARE cleavage mapping of human 2p, 6q, 8q, 12q, and 18q telomeres.. Genome research, 5 (3), pp. 225-32.

Tomlinson, I. M., Cook, G. P., Walter, G., Carter, N. P., Riethman, H. C., Buluwela, L., Rabbitts, T. H., and Winter, G. (1995). A complete map of the human immunoglobulin VH locus.. Annals of the New York Academy of Sciences, 764, pp. 43-6.

Macina, R. A., Barr, F. G., Galili, N., and Riethman, H. C. (1995). Genomic organization of the human PAX3 gene: DNA sequence analysis of the region disrupted in alveolar rhabdomyosarcoma.. Genomics, 26 (1), pp. 1-8.

Reston, J. T., Hu, X. L., Macina, R. A., Spais, C., and Riethman, H. C. (1995). Structure of the terminal 300 kb of DNA from human chromosome 21q.. Genomics, 26 (1), pp. 31-8.

Macina, R. A., Negorev, D. G., Spais, C., Ruthig, L. A., Hu, X. L., and Riethman, H. C. (1994). Sequence organization of the human chromosome 2q telomere.. Human molecular genetics, 3 (10), pp. 1847-53.

Macina, R. A., and Riethman, H. C. (1994). Mapping vector-adjacent DNA from a 7q human telomeric YAC using RARE.. Mammalian genome : official journal of the International Mammalian Genome Society, 5 (9), pp. 596.

Negorev, D. G., Macina, R. A., Spais, C., Ruthig, L. A., Hu, X. L., and Riethman, H. C. (1994). Physical analysis of the terminal 270 kb of DNA from human chromosome 1q.. Genomics, 22 (3), pp. 569-78.

Cook, G. P., Tomlinson, I. M., Walter, G., Riethman, H. C., Carter, N. P., Buluwela, L., Winter, G., and Rabbitts, T. H. (1994). A map of the human immunoglobulin VH locus completed by analysis of the telomeric region of chromosome 14q.. Nature genetics, 7 (2), pp. 162-8.

Strathdee, G., Harrison, W., Riethman, H. C., Goodart, S. A., and Overhauser, J. (1994). Interstitial deletions are not the main mechanism leading to 18q deletions.. American journal of human genetics, 54 (6), pp. 1085-91.

Popp, S., Jauch, A., Schindler, D., Speicher, M. R., Lengauer, C., Donis-Keller, H., Riethman, H. C., and Cremer, T. (1993). A strategy for the characterization of minute chromosome rearrangements using multiple color fluorescence in situ hybridization with chromosome-specific DNA libraries and YAC clones.. Human genetics, 92 (6), pp. 527-32.

Riethman, H. C., Spais, C., Buckingham, J., Grady, D., and Moyzis, R. K. (1993). Physical analysis of the terminal 240 kb of DNA from human chromosome 7q.. Genomics, 17 (1), pp. 25-32.

Lengauer, C., Speicher, M. R., Popp, S., Jauch, A., Taniwaki, M., Nagaraja, R., Riethman, H. C., Donis-Keller, H., D'Urso, M., and Schlessinger, D. (1993). Chromosomal bar codes produced by multicolor fluorescence in situ hybridization with multiple YAC clones and whole chromosome painting probes.. Human molecular genetics, 2 (5), pp. 505-12.

Helms, C., Mishra, S. K., Riethman, H. C., Burgess, A. K., Ramachandra, S., Tierney, C., Dorsey, D., and Donis-Keller, H. (1992). Closure of a genetic linkage map of human chromosome 7q with centromere and telomere polymorphisms.. Genomics, 14 (4), pp. 1041-54.

Lengauer, C., Riethman, H. C., Speicher, M. R., Taniwaki, M., Konecki, D., Green, E. D., Becher, R., Olson, M. V., and Cremer, T. (1992). Metaphase and interphase cytogenetics with Alu-PCR-amplified yeast artificial chromosome clones containing the BCR gene and the protooncogenes c-raf-1, c-fms, and c-erbB-2.. Cancer research, 52 (9), pp. 2590-6.

Macina, R. A., and Riethman, H. C. (1992). Direct DNA hybridization screening of primary yeast transformants in the construction of targeted yeast artificial chromosome (YAC) libraries.. Genetic analysis, techniques and applications, 9 (2), pp. 58-63.

Green, E. D., Riethman, H. C., Dutchik, J. E., and Olson, M. V. (1991). Detection and characterization of chimeric yeast artificial-chromosome clones.. Genomics, 11 (3), pp. 658-69.

Lengauer, C., Riethman, H. C., and Cremer, T. (1990). Painting of human chromosomes with probes generated from hybrid cell lines by PCR with Alu and L1 primers.. Human genetics, 86 (1), pp. 1-6.

Dietz-Band, J., Riethman, H. C., Hildebrand, C. E., and Moyzis, R. (1990). Characterization of polymorphic loci on a telomeric fragment of DNA from the long arm of human chromosome 7.. Genomics, 8 (1), pp. 168-70.

Riethman, H. C., Moyzis, R. K., Meyne, J., Burke, D. T., and Olson, M. V. (1989). Cloning human telomeric DNA fragments into Saccharomyces cerevisiae using a yeast-artificial-chromosome vector.. Proceedings of the National Academy of Sciences of the United States of America, 86 (16), pp. 6240-4.

Riethman, H. C., and Sherman, L. A. (1988). Immunological Characterization of Iron-Regulated Membrane Proteins in the Cyanobacterium Anacystis nidulans R2.. Plant physiology, 88 (2), pp. 497-505.

Riethman, H. C., Bullerjahn, G., Reddy, K. J., and Sherman, L. A. (1988). Regulation of cyanobacterial pigment-protein composition and organization by environmental factors.. Photosynthesis research, 18 (1-2), pp. 133-61.

Riethman, H. C., and Sherman, L. A. (1988). Purification and characterization of an iron stress-induced chlorophyll-protein from the cyanobacterium Anacystis nidulans R2.. Biochimica et biophysica acta, 935 (2), pp. 141-51.

Riethman, H. C., Mawhinney, T. P., and Sherman, L. A. (1988). Characterization of phycobilisome glycoproteins in the cyanobacterium Anacystis nidulans R2.. Journal of bacteriology, 170 (6), pp. 2433-40.

Masamoto, K., Riethman, H. C., and Sherman, L. A. (1987). Isolation and Characterization of a Carotenoid-Associated Thylakoid Protein from the Cyanobacterium Anacystis nidulans R2.. Plant physiology, 84 (3), pp. 633-9.

Riethman, H. C., Mawhinney, T. P., and Sherman, L. A. (1987). Phycobilisome-associated glycoproteins in the cyanobacterium Anacystis nidulans R 2.. FEBS letters, 215 (2), pp. 209-14.

Riethman, H. C., Boyer, M. J., and Wise, K. S. (1987). Triton X-114 phase fractionation of an integral membrane surface protein mediating monoclonal antibody killing of Mycoplasma hyorhinis.. Infection and immunity, 55 (5), pp. 1094-100.

Bullerjahn, G. S., Riethman, H. C., and Sherman, L. A. (1985). Organization of the thylakoid membrane from the heterotrophic cyanobacterium, Aphanocapsa 6714.. Biochimica et biophysica acta, 810 (2), pp. 148-57.

Pakrasi, H. B., Riethman, H. C., and Sherman, L. A. (1985). Organization of pigment proteins in the photosystem II complex of the cyanobacterium Anacystis nidulans R2.. Proceedings of the National Academy of Sciences of the United States of America, 82 (20), pp. 6903-7.