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- Yaohang Li
- Associate Professor
- Computer Science Department
- 3212 Engr and Comp Sci Bldg
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Norfolk,
VA
23529
- 757-683-7721
- y7li@odu.edu
- Web Page
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Education
- Florida State University,
2003
- Major: Computer Science
- Degree: Ph. D.
- Florida State University,
2000
- Major: Computer Science
- Degree: M.S.
- South China University of Technology,
1997
- Major: Computer Science and Engineering
- Degree: B.S.
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Research Interests
- Computational Science, Computational Biology, Monte Carlo Methods, Markov Chian Monte Carlo Grid/Distributed/Parallel Computing,
High Performance Computing, Bio-inspired approaches, random number generation
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Book Chapters
- Li, Y., and Mascagni, M. (2006). An Overview of Grid-based Monte Carlo Computing.. Grid Technologies, Emerging from Distributed Architectures to Virtual Organizations/WIT Press.
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Articles
- Li, Y., Arnold, N. D., Strauss, C. E., Bordner, A. J., Tian, Y., Tao, X., Schulthess, T. C., and Gorin, A. Extensive Exploration of Protein Conformational Space Reveals PRomises and Pitfalls of ab initio Folding Calculations. Journal of Mioinformatics and Computational Biology
- Rata, I., Li, Y., and Jakobsson, E. (2010). Backbone Statistical Potential from Local Sequence-Structure Interactions in Protein Loops. Journal of Phys. Chem. B, 114 (5), (pp. 1859-1869).
- Li, Y., Rata, I., Chiu, S., and Jakobsson, E. (2010). Improving Predicted Protein Loop Structure Ranking using a Pareto-Optimality Consensus Method. BMC Structural Biology, 10 (22),
- Li, Y., Rata, I., and Jakobsson, E. (2010). Integrating Multiple Scoring Functions to Improve Protein Loop Structure Conformation Space Sampling. Proceedings of IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB2010)
- Li, Y., Rata, I., and Jakobsson, E. Multi-Scoring Functions Sampling in Protein Loop Structure Precition. Applied Mathematics and Computation
- Li, Y., and Mascagni, M. Optimizing Dynamic Grd-based Resources for Large Scale Monte Carlo Applications. Mathematics and Computers in Simulation
- Li, Y., Mirugi, M., and Mascagni, M. Test the Rule 30 Cellular Automata Rnadon Number Generator. Mathematics and Computers in Simulation
- Waddell, I., Jones, N., Steed, C., Yuan, X., and Li, Y. (2010). Using the Workflow Technology in Secure Software Engineering Education. 14th Colloquium for Information Systems Security Education (CISSE2010)
- Li, Y., Mascagni, M., and Gorin, A. (2009). A Decentralized Parallel Implementation for Parallel Tempering Algorithm. Parallel Computing, 35 (5), (pp. 269-283).
- Li, Y., Protopopescu, V. A., Arnold, N., Zhang, X., and Gorin, A. (2009). Hybrid Parallel Tempering/Simulated Annealing Method. Applied Mathematics and Computation, 212, (pp. 216-228).
- Li, Y., and Song, Y. D. (2008). An Adaptive and Trustworthy Software Testing Framework on the Grid. Journal of SupterComptuing, 46, (pp. 124-138).
- Li, Y., Bordner, A. J., Tian, Y., Tao, X., and Gorin, A. (2008). Extensive Exploration of the Confromational Space Improves Rosetta Results for Short Protein Domains. 7th Annual International Conference on Computational Systems Bioinformatics (CSB08)
- Li, Y., Strauss, C. E., and Gorin, A. (2008). Hybrid Parallel Tempering and Simulated Annealing Method - an Efficient Smapling Method in ab initio Protein Folding. International Journal of Computational Science, 2 (5), (pp. 646-661).
- Li, Y., Chen, D., and Yuan, X. (2007). Trustworthy Remote Compiling Service for Grid-based Scientific Applications. Journal of SuperComputing, 41 (2), (pp. 119-131).
- Li, Y. (2006). A Bio-inspired Adaptive Job Scheduling Mechanism on the Grid. International Journal of Computer Science and Network Security, 6 (3B), (pp. 1-7).
- Li, Y., and Mascagni, M. (2005). Grid-based Quasi-Monte Carlo Applications. Monte Carlo Methods and Applications, 11 (39-55),
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Presentations
- From Seminole to Aggie: The Development of My Academic Career"
- Conference Name: Florida State University
- Sponsoring Organization: Florida State University
- Location: Tallahassee, FL
- Date: October 30, 2009
- Authors/Presenters:
Li, Y. Presenter & Author
- Hybrid Parallel Tempering/Simulated Annealing and its Applications in ab initio Protein Folding
- Sponsoring Organization: University of North Carolina, Charlotte
- Location: Charlotte, NC
- Date: November 3, 2006
- Authors/Presenters:
Li, Y. Presenter & Author
- Parallel Tempering in Rosetta Practice
- Conference Name: Oak Ridge Associated Universities
- Sponsoring Organization: Oak Ridge Associated Universities
- Location: Oak Ridge, TN
- Date: April 21, 2005
- Authors/Presenters:
Li, Y. Presenter & Author
- 2005: "Rookie of the Year" Young Researcher Award, North Carolina A&T State University
- 2009: CAREER Award, NSF
- 2005: Ralph E. Powe Junior Faculty Enhancement Award, Oak Ridge Associated Universities
- 2007: Summer Faculty Fellowship, National Center for Supercomputing Applications (NCSA)
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Contracts, Grants and Sponsored Research