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- Jing He
- Associate Professor
- Computer Science Department
- 3319 Engr and Comp Sci Bldg
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Norfolk,
VA
23529
- 757-683-7716
- jhe@odu.edu
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Education
- Baylor College of Medicine,
2001
- Major: Structural & Computational Biology & Molecular Biophysics
- Degree: Ph. D.
- New Mexico State University,
1994
- Major: Applied Mathematics
- Degree: M.S.
- Jilin University,
1990
- Major: Applied Mathematics
- Degree: B.S.
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Research Interests
- -Development computational methods and tools ofr biological problems that involve molecular structures. The scholar's current
work involves developing the simplified representations of 3-dimensional protein structure components to reduce the computation,
developing the corresponding energyfunctions using statistical approaches, and improving the optimization process using the
geometrical constraints computationally extracted from the protein density. The goal of my research is to contribute from
the computer science point of view to the grand challenge of the protein folding problem.
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Articles
- Al Nasr, K., and He, J. (2009). An Effective Convergence Independent Loop Closure Method using Forward-backed Cyclic Coordinate Descent. International Journal of Data Mining in Bioinformatics, 3 (3), (pp. p.346-61).
- Sun, W., and He, J. (2009). Native Secondary Structure Topology has Near Minimum Contact Energy among All Possible Geometrically Constrained Topolgies. Proteins: Structure, Function and Bioinformatics, 77 (1), (pp. 159-73).
- Sun, W., and He, J. (2009). Reduction of the secondary structure topological space through direct estimation of the contact energy formed by the secondary
structure. MC Bioinformatics, 10 (1),
- Sun, W., and He, J. (2009). The Effect of sidechain aisotropy on residue contact determination. Computational Structural Bioinformatics Workshop
- Lu, Y., He, J., and Strauss, C. E. (2008). Deriving Topology and Sequence Alignment for Helix Skeleton in Low Resolution Protein Density Maps. Journal of Bionformatics and COmputational Biology, 6 (1), (pp. 183-201).
- Del Palu, A., Pontelli, E., He, J., and Lu, Y. (2007). A Constraint Logic Programming Approach to Associate ID and 3D Structural Components for Large Protein Complexes. International Bioinformatics (CSB) 2006, 1 (4), (pp. 352-71).
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Contracts, Grants and Sponsored Research